The Configuration option under File can be used to specify the location of the BLAST, EMBOSS, COMPART, SPLIGN, PROCOMPART, PROSPLIGN and BEDTOOLS binaries, as well as the location of the Repository.
Important note: Please, note that this option is not available when BDBM is installed using the Docker-based installers. When using this option, external tools are installed and BDBM is configured during the automatized installation process, so that you don't have to worry about this.
The Configuration option